Product Name
ATXN3, siRNA
Full Product Name
ATXN3 siRNA (Human)
Product Synonym Names
ATX3; MJD; MJD1; SCA3; Ataxin-3; Machado-Joseph disease protein 1; Spinocerebellar ataxia type 3 protein
Product Gene Name
ATXN3 sirna
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Research Use Only
For Research Use Only. Not for use in diagnostic procedures.
3D Structure
ModBase 3D Structure for P54252
Specificity
ATXN3 siRNA (Human) is a target-specific 19-23 nt siRNA oligo duplexes designed to knock down gene expression.
Purity/Purification
> 97%
Form/Format
Lyophilized powder
Quality Control
Oligonucleotide synthesis is monitored base by base through trityl analysis to ensure appropriate coupling efficiency. The oligo is subsequently purified by affinity-solid phase extraction. The annealed RNA duplex is further analyzed by mass spectrometry to verify the exact composition of the duplex. Each lot is compared to the previous lot by mass spectrometry to ensure maximum lot-to-lot consistency.
Directions for Use
We recommends transfection with 100 nM siRNA 48 to 72 hours prior to cell lysis. Before resuspending, briefly centrifuge the tube to ensure the lyophilized siRNA is at the bottom of the tube. Resuspend the siRNA oligos to an appropriate concentration with DEPC water. For each vial, suitable for 250 transfections in 24 well plate (20 pmol for each well).
Components
We offer pre-designed sets of 3 different target-specific siRNA oligo duplexes of human ATXN3 gene. Each vial contains 5 nmol of lyophilized siRNA. The duplexes can be transfected individually or pooled together to achieve knockdown of the target gene, which is most commonly assessed by qPCR or western blot. Our siRNA oligos are also chemically modified (2'-OMe) at no extra charge for increased stability and enhanced knockdown in vitro and in vivo.
Preparation and Storage
Shipped at 4 degree C. Store at -20 degree C for one year.
Negative Control
siRNA Negative Control (Catalog# MBS8241404) is a non-targeting 21 nt siRNA recommended as a negative control for experiments using targeted siRNA transfection.
Other Notes
Small volumes of ATXN3 sirna vial(s) may occasionally become entrapped in the seal of the product vial during shipment and storage. If necessary, briefly centrifuge the vial on a tabletop centrifuge to dislodge any liquid in the container`s cap. Certain products may require to ship with dry ice and additional dry ice fee may apply.
Related Product Information for
ATXN3 sirna
siRNA to inhibit ATXN3 expression using RNA interference
Applications Tested/Suitable for ATXN3 sirna
RNA Interference (RNAi)
NCBI/Uniprot data below describe general gene information for ATXN3. It may not necessarily be applicable to this product.
NCBI Accession #
NP_001121168.1
[Other Products]
NCBI GenBank Nucleotide #
NM_001127696.1
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UniProt Primary Accession #
P54252
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UniProt Secondary Accession #
O15284; O15285; O15286; Q8N189; Q96TC3; Q96TC4; Q9H3N0; A7LFZ5; D6RDL9; E9PB63[Other Products]
UniProt Related Accession #
P54252[Other Products]
Molecular Weight
20,633 Da
NCBI Official Full Name
ataxin-3 isoform ad
NCBI Official Synonym Full Names
ataxin 3
NCBI Official Symbol
ATXN3 [Similar Products]
NCBI Official Synonym Symbols
AT3; JOS; MJD; ATX3; MJD1; SCA3
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NCBI Protein Information
ataxin-3
UniProt Protein Name
Ataxin-3
UniProt Synonym Protein Names
Machado-Joseph disease protein 1; Spinocerebellar ataxia type 3 protein
UniProt Gene Name
ATXN3 [Similar Products]
UniProt Synonym Gene Names
ATX3; MJD; MJD1; SCA3 [Similar Products]
UniProt Entry Name
ATX3_HUMAN
NCBI Summary for ATXN3
Machado-Joseph disease, also known as spinocerebellar ataxia-3, is an autosomal dominant neurologic disorder. The protein encoded by this gene contains (CAG)n repeats in the coding region, and the expansion of these repeats from the normal 13-36 to 68-79 is one cause of Machado-Joseph disease. There is a negative correlation between the age of onset and CAG repeat numbers. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Sep 2009]
UniProt Comments for ATXN3
ataxin-3: Deubiquitinating enzyme involved in protein homeostasis maintenance, transcription, cytoskeleton regulation, myogenesis and degradation of misfolded chaperone substrates. Binds long polyubiquitin chains and trims them, while it has weak or no activity against chains of 4 or less ubiquitins. Involved in degradation of misfolded chaperone substrates via its interaction with STUB1/CHIP: recruited to monoubiquitinated STUB1/CHIP, and restricts the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. In response to misfolded substrate ubiquitination, mediates deubiquitination of monoubiquitinated STUB1/CHIP. Interacts with key regulators of transcription and represses transcription: acts as a histone- binding protein that regulates transcription. Defects in ATXN3 are the cause of spinocerebellar ataxia type 3 (SCA3); also known as Machado-Joseph disease (MJD). Spinocerebellar ataxia is a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA3 belongs to the autosomal dominant cerebellar ataxias type I (ADCA I) which are characterized by cerebellar ataxia in combination with additional clinical features like optic atrophy, ophthalmoplegia, bulbar and extrapyramidal signs, peripheral neuropathy and dementia. The molecular defect in SCA3 is the a CAG repeat expansion in ATXN3 coding region. Longer expansions result in earlier onset and more severe clinical manifestations of the disease. 3 isoforms of the human protein are produced by alternative splicing.
Protein type: DNA repair, damage; Protease; Ubiquitin-specific protease; EC 3.4.19.12; Transcription regulation
Chromosomal Location of Human Ortholog: 14q21
Cellular Component: nucleoplasm; nuclear matrix; mitochondrial matrix; cytoplasm; mitochondrial membrane; cytosol; nucleus; nuclear inclusion body
Molecular Function: identical protein binding; protein binding; omega peptidase activity; ubiquitin protein ligase binding; ubiquitin-specific protease activity; ATPase binding
Biological Process: ubiquitin-dependent protein catabolic process; synaptic transmission; nervous system development; proteasomal ubiquitin-dependent protein catabolic process; transcription, DNA-dependent; regulation of transcription, DNA-dependent; nucleotide-excision repair; misfolded or incompletely synthesized protein catabolic process; intermediate filament cytoskeleton organization and biogenesis; microtubule cytoskeleton organization and biogenesis; actin cytoskeleton organization and biogenesis
Disease: Machado-joseph Disease
Research Articles on ATXN3
1. Wide type and polyQ-expanded ataxin-3 both showed partial co-localization to endoplasmic reticulum.
Precautions
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